vivarium.cluster_tools
  • Installation
  • Running simulations in parallel
  • YAML Basics
  • The Branches File
  • Dagger: Multi-Step Workflows
  • Logging
  • API Reference
    • vivarium.cluster_tools
    • vivarium.cluster_tools Utilities
    • get_cluster_name()
    • hash_output_path()
    • mkdir()
    • backoff_and_retry()
    • core
    • Shared CLI tools
    • with_verbose_and_pdb()
    • with_sim_verbosity()
    • resolve_sim_verbosity()
    • with_slack_channel()
    • with_slack_tag()
    • with_slack_mute()
    • validate_slack_options()
    • coerce_to_full_path()
    • pass_shared_options()
    • MinutesOrNone
    • load_run_config()
    • with_run_config()
    • with_workflow_config()
    • resolve_deprecated_positional()
    • Logging Utilities
    • configure_main_process_logging_to_terminal()
    • configure_main_process_logging_to_file()
    • Cluster Interaction
    • Cluster CLI options
    • with_queue_and_max_runtime()
    • Cluster Interface
    • NativeSpecification
    • get_workflow_timeout_seconds()
    • dagger
    • dagger CLI
    • dagger Runner
    • run_workflow()
    • restart_workflow()
    • Workflow Configuration
    • Workflow Builder
    • STEP_TYPE_API_FNS
    • build_workflow_from_config()
    • Workflow Configuration
    • REQUIRED_WORKFLOW_FIELDS
    • DEFAULT_BACKUP_FREQ_SECONDS
    • ResourceConfig
    • ParsedStep
    • WorkflowConfig
    • Workflow Config Interface
    • get_step_resources()
    • get_bash_step_tasks()
    • get_simulation_step_tasks()
    • get_pytest_step_tasks()
    • get_python_step_tasks()
    • get_notebook_step_tasks()
    • Workflow Step Parsing
    • resolve_step_type()
    • parse_bash_step_from_yaml()
    • parse_simulation_step_from_yaml()
    • parse_pytest_step_from_yaml()
    • parse_python_step_from_yaml()
    • parse_notebook_step_from_yaml()
    • STEP_TYPE_YAML_PARSERS
    • parse_step_from_yaml()
    • load_workflow_config()
    • Workflow Step Serialization
    • serialize_bash_step_to_yaml()
    • serialize_simulation_step_to_yaml()
    • serialize_pytest_step_to_yaml()
    • serialize_python_step_to_yaml()
    • serialize_notebook_step_to_yaml()
    • STEP_TYPE_YAML_SERIALIZERS
    • workflow_config_to_dict()
    • Workflow Step Validation
    • validate_bash_step()
    • validate_simulation_step()
    • validate_pytest_step()
    • validate_python_step()
    • validate_notebook_step()
    • psimulate
    • Branch and Keyspace Management
    • Keyspace
    • calculate_input_draws()
    • calculate_random_seeds()
    • calculate_keyspace()
    • load_branch_configuration()
    • expand_branch_templates()
    • validate_artifact_path()
    • psimulate CLI
    • Environment Variables
    • EnvVariable
    • psimulate Jobs
    • BackupConfiguration
    • generate_task_id()
    • JobParameters
    • build_job_parameters_from_keyspace()
    • build_job_list()
    • already_complete()
    • Model specification management
    • parse()
    • persist()
    • File Path Management
    • InputPaths
    • OutputPaths
    • transform_perf_df_for_appending()
    • append_child_job_data()
    • generate_runner_job_data()
    • append_perf_data_to_central_logs()
    • Reproducible Programming Environments
    • validate()
    • psimulate Runner
    • report_initial_status()
    • try_run_vipin()
    • write_backup_metadata()
    • write_configuration()
    • main()
    • Results Management
    • Results CLI Options
    • Results Writing
    • write_metadata()
    • write_task_results()
    • get_completed_task_ids()
    • collect_metadata()
    • psimulate Workers
    • Load Test Worker
    • get_psimulate_test_dict()
    • sleep_test()
    • large_results_test()
    • work_horse()
    • Jobmon Task Runner
    • parse_args()
    • main()
    • Vivarium Worker
    • ParallelSimulationContext
    • work_horse()
    • get_backup()
    • get_sim_from_backup()
    • initialize_new_sim()
    • run_simulation()
    • get_sim_results()
    • do_sim_epilogue()
    • remove_backups()
    • vipin - Vivarium Performance Log Parser
      • vipin
      • vipin CLI
      • vipin Performance Counters
      • CounterSnapshot
      • Performance Reporting
      • PerformanceSummary
      • set_index_scenario_cols()
      • print_stat_report()
      • report_performance()
  • Glossary
vivarium.cluster_tools
  • API Reference
  • vipin - Vivarium Performance Log Parser
  • View page source

vipin - Vivarium Performance Log Parser

vipin

Performance log parsing utilities.

  • vipin CLI
    • vipin
  • vipin Performance Counters
  • CounterSnapshot
    • CounterSnapshot.to_dict()
  • Performance Reporting
  • PerformanceSummary
    • PerformanceSummary.log_dir
    • PerformanceSummary.errors
    • PerformanceSummary.get_summaries()
    • PerformanceSummary.to_df()
    • PerformanceSummary.TELEMETRY_PATTERN
    • PerformanceSummary.PERF_LOG_PATTERN
    • PerformanceSummary.clean_perf_logs()
  • set_index_scenario_cols()
  • print_stat_report()
  • report_performance()
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