Index

Symbols

--add-draws psimulate-expand command line option --add-seeds psimulate-expand command line option --artifact_path psimulate-run command line option --backup-freq psimulate-expand command line option psimulate-restart command line option psimulate-run command line option psimulate-test command line option --branch-configuration psimulate-run command line option --config dagger-run command line option --csv vipin command line option --default-environment dagger-run command line option --hardware psimulate-expand command line option psimulate-restart command line option psimulate-run command line option psimulate-test command line option --hdf vipin command line option --max-attempts dagger-restart command line option dagger-run command line option psimulate-expand command line option psimulate-restart command line option psimulate-run command line option psimulate-test command line option --max-runtime psimulate-expand command line option psimulate-restart command line option psimulate-run command line option psimulate-test command line option --max-workers psimulate-expand command line option psimulate-restart command line option psimulate-run command line option psimulate-test command line option --model-specification psimulate-run command line option --name dagger-run command line option --no-slack dagger-restart command line option dagger-run command line option psimulate-expand command line option psimulate-restart command line option psimulate-run command line option psimulate-test command line option --num-workers psimulate-test command line option --output-directory dagger-run command line option --pdb dagger-restart command line option dagger-run command line option psimulate-expand command line option psimulate-restart command line option psimulate-run command line option psimulate-test command line option --peak-memory psimulate-expand command line option psimulate-restart command line option psimulate-run command line option psimulate-test command line option --project dagger-restart command line option dagger-run command line option psimulate-expand command line option psimulate-restart command line option psimulate-run command line option psimulate-test command line option --queue dagger-restart command line option dagger-run command line option psimulate-expand command line option psimulate-restart command line option psimulate-run command line option psimulate-test command line option --result-directory psimulate-run command line option psimulate-test command line option vipin command line option --results-root psimulate-expand command line option psimulate-restart command line option

--run-config psimulate-expand command line option psimulate-restart command line option psimulate-run command line option --slack-channel dagger-restart command line option dagger-run command line option psimulate-expand command line option psimulate-restart command line option psimulate-run command line option psimulate-test command line option --slack-tag dagger-restart command line option dagger-run command line option psimulate-expand command line option psimulate-restart command line option psimulate-run command line option psimulate-test command line option -B psimulate-run command line option -c dagger-run command line option psimulate-expand command line option psimulate-restart command line option psimulate-run command line option -e dagger-run command line option -h psimulate-expand command line option psimulate-restart command line option psimulate-run command line option psimulate-test command line option -i psimulate-run command line option -M psimulate-run command line option -m dagger-restart command line option dagger-run command line option psimulate-expand command line option psimulate-restart command line option psimulate-run command line option psimulate-test command line option -n dagger-run command line option psimulate-test command line option -o dagger-run command line option psimulate-run command line option psimulate-test command line option vipin command line option -P dagger-restart command line option dagger-run command line option psimulate-expand command line option psimulate-restart command line option psimulate-run command line option psimulate-test command line option -q dagger-restart command line option dagger-run command line option psimulate-expand command line option psimulate-restart command line option psimulate-run command line option psimulate-test command line option -R psimulate-expand command line option psimulate-restart command line option -r psimulate-expand command line option psimulate-restart command line option psimulate-run command line option psimulate-test command line option -s psimulate-expand command line option psimulate-restart command line option psimulate-run command line option psimulate-test command line option -v dagger-restart command line option dagger-run command line option psimulate-expand command line option psimulate-restart command line option psimulate-run command line option psimulate-test command line option vipin command line option -w psimulate-expand command line option psimulate-restart command line option psimulate-run command line option psimulate-test command line option

A

add_draws() (vivarium.cluster_tools.psimulate.branches.Keyspace method) add_seeds() (vivarium.cluster_tools.psimulate.branches.Keyspace method) already_complete() (in module vivarium.cluster_tools.psimulate.jobs) api_kwargs (vivarium.cluster_tools.dagger.config.config.ParsedStep attribute)

append_child_job_data() (in module vivarium.cluster_tools.psimulate.performance_logger) append_perf_data_to_central_logs() (in module vivarium.cluster_tools.psimulate.performance_logger) artifact (vivarium.cluster_tools.psimulate.paths.InputPaths attribute) artifact_name (vivarium.cluster_tools.psimulate.paths.OutputPaths property)

B

backoff_and_retry() (in module vivarium.cluster_tools.utilities) backup_configuration (vivarium.cluster_tools.psimulate.jobs.JobParameters attribute) backup_dir (vivarium.cluster_tools.psimulate.jobs.BackupConfiguration attribute) (vivarium.cluster_tools.psimulate.paths.OutputPaths attribute) backup_freq (vivarium.cluster_tools.psimulate.jobs.BackupConfiguration attribute) backup_metadata_path (vivarium.cluster_tools.psimulate.jobs.BackupConfiguration attribute) (vivarium.cluster_tools.psimulate.paths.OutputPaths attribute) BackupConfiguration (class in vivarium.cluster_tools.psimulate.jobs)

Branch Configuration branch_configuration (vivarium.cluster_tools.psimulate.jobs.JobParameters attribute) (vivarium.cluster_tools.psimulate.paths.InputPaths attribute) BRANCH_CONFIGURATION_POS psimulate-run command line option branches (vivarium.cluster_tools.psimulate.paths.OutputPaths attribute) build_job_list() (in module vivarium.cluster_tools.psimulate.jobs) build_job_parameters_from_keyspace() (in module vivarium.cluster_tools.psimulate.jobs) build_workflow_from_config() (in module vivarium.cluster_tools.dagger.config.builder)

C

calculate_input_draws() (in module vivarium.cluster_tools.psimulate.branches) calculate_keyspace() (in module vivarium.cluster_tools.psimulate.branches) calculate_random_seeds() (in module vivarium.cluster_tools.psimulate.branches) clean_perf_logs() (vivarium.cluster_tools.vipin.perf_report.PerformanceSummary method) coerce_to_full_path() (in module vivarium.cluster_tools.core.cli_tools) collect_metadata() (in module vivarium.cluster_tools.psimulate.results.writing)

Configuration Parameter configure_main_process_logging_to_file() (in module vivarium.cluster_tools.core.logs) configure_main_process_logging_to_terminal() (in module vivarium.cluster_tools.core.logs) convert() (vivarium.cluster_tools.core.cli_tools.MinutesOrNone method) cores (vivarium.cluster_tools.core.cluster.interface.NativeSpecification attribute) (vivarium.cluster_tools.dagger.config.config.ResourceConfig attribute) CounterSnapshot (class in vivarium.cluster_tools.vipin.perf_counters)

D

dagger-restart command line option --max-attempts --no-slack --pdb --project --queue --slack-channel --slack-tag -m -P -q -v RESULTS_DIRECTORY dagger-run command line option --config --default-environment --max-attempts --name --no-slack --output-directory --pdb --project --queue --slack-channel --slack-tag -c -e -m -n -o -P -q -v

DEFAULT_BACKUP_FREQ_SECONDS (in module vivarium.cluster_tools.dagger.config.config) default_environment (vivarium.cluster_tools.dagger.config.config.WorkflowConfig attribute) do_sim_epilogue() (in module vivarium.cluster_tools.psimulate.worker.vivarium_work_horse)

E

environment_file (vivarium.cluster_tools.psimulate.paths.OutputPaths attribute) EnvVariable (class in vivarium.cluster_tools.psimulate.environment)

errors (vivarium.cluster_tools.vipin.perf_report.PerformanceSummary attribute) expand_branch_templates() (in module vivarium.cluster_tools.psimulate.branches) extras (vivarium.cluster_tools.psimulate.jobs.JobParameters attribute)

F

for_load_test() (vivarium.cluster_tools.psimulate.branches.Keyspace class method) from_branch_configuration() (vivarium.cluster_tools.psimulate.branches.Keyspace class method) from_dict() (vivarium.cluster_tools.dagger.config.config.ResourceConfig class method)

from_entry_point_args() (vivarium.cluster_tools.psimulate.branches.Keyspace class method) (vivarium.cluster_tools.psimulate.paths.InputPaths class method) (vivarium.cluster_tools.psimulate.paths.OutputPaths class method) from_previous_run() (vivarium.cluster_tools.psimulate.branches.Keyspace class method)

G

generate_runner_job_data() (in module vivarium.cluster_tools.psimulate.performance_logger) generate_task_id() (in module vivarium.cluster_tools.psimulate.jobs) get_backup() (in module vivarium.cluster_tools.psimulate.worker.vivarium_work_horse) get_bash_step_tasks() (in module vivarium.cluster_tools.dagger.config.interface) get_cluster_name() (in module vivarium.cluster_tools.utilities) get_completed_task_ids() (in module vivarium.cluster_tools.psimulate.results.writing) get_notebook_step_tasks() (in module vivarium.cluster_tools.dagger.config.interface) get_psimulate_test_dict() (in module vivarium.cluster_tools.psimulate.worker.load_test_work_horse)

get_pytest_step_tasks() (in module vivarium.cluster_tools.dagger.config.interface) get_python_step_tasks() (in module vivarium.cluster_tools.dagger.config.interface) get_sim_from_backup() (in module vivarium.cluster_tools.psimulate.worker.vivarium_work_horse) get_sim_results() (in module vivarium.cluster_tools.psimulate.worker.vivarium_work_horse) get_simulation_step_tasks() (in module vivarium.cluster_tools.dagger.config.interface) get_step_resources() (in module vivarium.cluster_tools.dagger.config.interface) get_summaries() (vivarium.cluster_tools.vipin.perf_report.PerformanceSummary method) get_workflow_timeout_seconds() (in module vivarium.cluster_tools.core.cluster.interface)

H

hardware (vivarium.cluster_tools.core.cluster.interface.NativeSpecification attribute) (vivarium.cluster_tools.dagger.config.config.ResourceConfig attribute)

hash_output_path() (in module vivarium.cluster_tools.utilities)

I

initialize_new_sim() (in module vivarium.cluster_tools.psimulate.worker.vivarium_work_horse) Input Draw

input_draw (vivarium.cluster_tools.psimulate.jobs.JobParameters attribute) InputPaths (class in vivarium.cluster_tools.psimulate.paths)

J

job_name (vivarium.cluster_tools.core.cluster.interface.NativeSpecification attribute)

job_specific (vivarium.cluster_tools.psimulate.jobs.JobParameters property) JobParameters (class in vivarium.cluster_tools.psimulate.jobs)

K

Keyspace (class in vivarium.cluster_tools.psimulate.branches)

keyspace (vivarium.cluster_tools.psimulate.paths.OutputPaths attribute)

L

large_results_test() (in module vivarium.cluster_tools.psimulate.worker.load_test_work_horse) load_branch_configuration() (in module vivarium.cluster_tools.psimulate.branches) load_run_config() (in module vivarium.cluster_tools.core.cli_tools) load_workflow_config() (in module vivarium.cluster_tools.dagger.config.parsing)

log_dir (vivarium.cluster_tools.vipin.perf_report.PerformanceSummary attribute) logging_root (vivarium.cluster_tools.psimulate.paths.OutputPaths attribute) logging_to_central_results_directory (vivarium.cluster_tools.psimulate.paths.OutputPaths property) LOGS_DIRECTORY vipin command line option

M

main() (in module vivarium.cluster_tools.psimulate.runner) (in module vivarium.cluster_tools.psimulate.worker.task_runner) max_attempts (vivarium.cluster_tools.dagger.config.config.WorkflowConfig attribute) max_runtime (vivarium.cluster_tools.core.cluster.interface.NativeSpecification attribute) memory_gb (vivarium.cluster_tools.dagger.config.config.ResourceConfig attribute) metadata_dir (vivarium.cluster_tools.psimulate.paths.OutputPaths attribute) MinutesOrNone (class in vivarium.cluster_tools.core.cli_tools) mkdir() (in module vivarium.cluster_tools.utilities) Model Specification model_specification (vivarium.cluster_tools.psimulate.jobs.JobParameters attribute) (vivarium.cluster_tools.psimulate.paths.InputPaths attribute) (vivarium.cluster_tools.psimulate.paths.OutputPaths attribute) MODEL_SPECIFICATION_POS psimulate-run command line option module vivarium.cluster_tools vivarium.cluster_tools.core vivarium.cluster_tools.core.cli_tools vivarium.cluster_tools.core.cluster vivarium.cluster_tools.core.cluster.cli_options vivarium.cluster_tools.core.cluster.interface vivarium.cluster_tools.core.logs vivarium.cluster_tools.dagger vivarium.cluster_tools.dagger.cli vivarium.cluster_tools.dagger.config vivarium.cluster_tools.dagger.config.builder vivarium.cluster_tools.dagger.config.config vivarium.cluster_tools.dagger.config.interface vivarium.cluster_tools.dagger.config.parsing vivarium.cluster_tools.dagger.config.serialization vivarium.cluster_tools.dagger.config.validation vivarium.cluster_tools.dagger.runner vivarium.cluster_tools.psimulate vivarium.cluster_tools.psimulate.branches vivarium.cluster_tools.psimulate.cli vivarium.cluster_tools.psimulate.environment vivarium.cluster_tools.psimulate.jobs vivarium.cluster_tools.psimulate.model_specification vivarium.cluster_tools.psimulate.paths vivarium.cluster_tools.psimulate.performance_logger vivarium.cluster_tools.psimulate.pip_env vivarium.cluster_tools.psimulate.results vivarium.cluster_tools.psimulate.results.cli_options vivarium.cluster_tools.psimulate.results.writing vivarium.cluster_tools.psimulate.runner vivarium.cluster_tools.psimulate.worker vivarium.cluster_tools.psimulate.worker.load_test_work_horse vivarium.cluster_tools.psimulate.worker.task_runner vivarium.cluster_tools.psimulate.worker.vivarium_work_horse vivarium.cluster_tools.utilities vivarium.cluster_tools.vipin vivarium.cluster_tools.vipin.cli vivarium.cluster_tools.vipin.perf_counters vivarium.cluster_tools.vipin.perf_report

N

name (vivarium.cluster_tools.core.cli_tools.MinutesOrNone attribute) (vivarium.cluster_tools.dagger.config.config.ParsedStep attribute) (vivarium.cluster_tools.dagger.config.config.WorkflowConfig attribute) (vivarium.cluster_tools.psimulate.environment.EnvVariable property)

NativeSpecification (class in vivarium.cluster_tools.core.cluster.interface)

O

original_run_date (vivarium.cluster_tools.psimulate.paths.OutputPaths property)

output_directory (vivarium.cluster_tools.dagger.config.config.WorkflowConfig attribute) OutputPaths (class in vivarium.cluster_tools.psimulate.paths)

P

ParallelSimulationContext (class in vivarium.cluster_tools.psimulate.worker.vivarium_work_horse) Parameter Uncertainty parse() (in module vivarium.cluster_tools.psimulate.model_specification) parse_args() (in module vivarium.cluster_tools.psimulate.worker.task_runner) parse_bash_step_from_yaml() (in module vivarium.cluster_tools.dagger.config.parsing) parse_notebook_step_from_yaml() (in module vivarium.cluster_tools.dagger.config.parsing) parse_pytest_step_from_yaml() (in module vivarium.cluster_tools.dagger.config.parsing) parse_python_step_from_yaml() (in module vivarium.cluster_tools.dagger.config.parsing) parse_simulation_step_from_yaml() (in module vivarium.cluster_tools.dagger.config.parsing) parse_step_from_yaml() (in module vivarium.cluster_tools.dagger.config.parsing) parse_yaml_file() (vivarium.cluster_tools.dagger.config.config.WorkflowConfig static method) ParsedStep (class in vivarium.cluster_tools.dagger.config.config) pass_shared_options() (in module vivarium.cluster_tools.core.cli_tools) peak_memory (vivarium.cluster_tools.core.cluster.interface.NativeSpecification attribute) PERF_LOG_PATTERN (vivarium.cluster_tools.vipin.perf_report.PerformanceSummary attribute) PerformanceSummary (class in vivarium.cluster_tools.vipin.perf_report) persist() (in module vivarium.cluster_tools.psimulate.model_specification) (vivarium.cluster_tools.psimulate.branches.Keyspace method) print_stat_report() (in module vivarium.cluster_tools.vipin.perf_report) project (vivarium.cluster_tools.core.cluster.interface.NativeSpecification attribute) (vivarium.cluster_tools.dagger.config.config.ResourceConfig attribute) (vivarium.cluster_tools.dagger.config.config.WorkflowConfig attribute) project_name (vivarium.cluster_tools.psimulate.paths.OutputPaths property) psimulate-expand command line option --add-draws --add-seeds --backup-freq --hardware --max-attempts --max-runtime --max-workers --no-slack --pdb --peak-memory --project --queue --results-root --run-config --slack-channel --slack-tag -c -h -m -P -q -R -r -s -v -w RESULTS_ROOT_POS psimulate-restart command line option --backup-freq --hardware --max-attempts --max-runtime --max-workers --no-slack --pdb --peak-memory --project --queue --results-root --run-config --slack-channel --slack-tag -c -h -m -P -q -R -r -s -v -w RESULTS_ROOT_POS

psimulate-run command line option --artifact_path --backup-freq --branch-configuration --hardware --max-attempts --max-runtime --max-workers --model-specification --no-slack --pdb --peak-memory --project --queue --result-directory --run-config --slack-channel --slack-tag -B -c -h -i -M -m -o -P -q -r -s -v -w BRANCH_CONFIGURATION_POS MODEL_SPECIFICATION_POS psimulate-test command line option --backup-freq --hardware --max-attempts --max-runtime --max-workers --no-slack --num-workers --pdb --peak-memory --project --queue --result-directory --slack-channel --slack-tag -h -m -n -o -P -q -r -s -v -w TEST_TYPE

Q

queue (vivarium.cluster_tools.core.cluster.interface.NativeSpecification attribute) (vivarium.cluster_tools.dagger.config.config.ResourceConfig attribute) (vivarium.cluster_tools.dagger.config.config.WorkflowConfig attribute)

R

Random Seed random_seed (vivarium.cluster_tools.psimulate.jobs.JobParameters attribute) remove_backups() (in module vivarium.cluster_tools.psimulate.worker.vivarium_work_horse) report_initial_status() (in module vivarium.cluster_tools.psimulate.runner) report_performance() (in module vivarium.cluster_tools.vipin.perf_report) REQUIRED_WORKFLOW_FIELDS (in module vivarium.cluster_tools.dagger.config.config) requires_archive_node (vivarium.cluster_tools.core.cluster.interface.NativeSpecification attribute) (vivarium.cluster_tools.dagger.config.config.ResourceConfig attribute) resolve_deprecated_positional() (in module vivarium.cluster_tools.core.cli_tools) resolve_sim_verbosity() (in module vivarium.cluster_tools.core.cli_tools) resolve_step_type() (in module vivarium.cluster_tools.dagger.config.parsing) ResourceConfig (class in vivarium.cluster_tools.dagger.config.config) restart_workflow() (in module vivarium.cluster_tools.dagger.runner) result_directory (vivarium.cluster_tools.psimulate.paths.InputPaths attribute)

results_dir (vivarium.cluster_tools.psimulate.paths.OutputPaths attribute) RESULTS_DIRECTORY dagger-restart command line option results_path (vivarium.cluster_tools.psimulate.jobs.JobParameters attribute) RESULTS_ROOT_POS psimulate-expand command line option psimulate-restart command line option root (vivarium.cluster_tools.psimulate.paths.OutputPaths attribute) root_path (vivarium.cluster_tools.psimulate.paths.OutputPaths property) run_date (vivarium.cluster_tools.psimulate.paths.OutputPaths property) run_simulation() (in module vivarium.cluster_tools.psimulate.worker.vivarium_work_horse) run_type (vivarium.cluster_tools.psimulate.paths.OutputPaths property) run_workflow() (in module vivarium.cluster_tools.dagger.runner) runtime (vivarium.cluster_tools.dagger.config.config.ResourceConfig attribute)

S

serialize_bash_step_to_yaml() (in module vivarium.cluster_tools.dagger.config.serialization) serialize_notebook_step_to_yaml() (in module vivarium.cluster_tools.dagger.config.serialization) serialize_pytest_step_to_yaml() (in module vivarium.cluster_tools.dagger.config.serialization) serialize_python_step_to_yaml() (in module vivarium.cluster_tools.dagger.config.serialization) serialize_simulation_step_to_yaml() (in module vivarium.cluster_tools.dagger.config.serialization) set_index_scenario_cols() (in module vivarium.cluster_tools.vipin.perf_report) shared (vivarium.cluster_tools.psimulate.jobs.JobParameters property)

sim_config (vivarium.cluster_tools.psimulate.jobs.JobParameters property) sleep_test() (in module vivarium.cluster_tools.psimulate.worker.load_test_work_horse) step_type (vivarium.cluster_tools.dagger.config.config.ParsedStep attribute) STEP_TYPE_API_FNS (in module vivarium.cluster_tools.dagger.config.builder) STEP_TYPE_YAML_PARSERS (in module vivarium.cluster_tools.dagger.config.parsing) STEP_TYPE_YAML_SERIALIZERS (in module vivarium.cluster_tools.dagger.config.serialization) steps (vivarium.cluster_tools.dagger.config.config.WorkflowConfig attribute) Stochastic Uncertainty

T

task_id (vivarium.cluster_tools.psimulate.jobs.JobParameters property) TELEMETRY_PATTERN (vivarium.cluster_tools.vipin.perf_report.PerformanceSummary attribute) TEST_TYPE psimulate-test command line option to_df() (vivarium.cluster_tools.vipin.perf_report.PerformanceSummary method) to_dict() (vivarium.cluster_tools.dagger.config.config.ResourceConfig method) (vivarium.cluster_tools.psimulate.jobs.JobParameters method) (vivarium.cluster_tools.vipin.perf_counters.CounterSnapshot method)

to_jobmon_spec() (vivarium.cluster_tools.core.cluster.interface.NativeSpecification method) to_native_specification() (vivarium.cluster_tools.dagger.config.config.ResourceConfig method) touch() (vivarium.cluster_tools.psimulate.paths.OutputPaths method) transform_perf_df_for_appending() (in module vivarium.cluster_tools.psimulate.performance_logger) try_run_vipin() (in module vivarium.cluster_tools.psimulate.runner)

U

update() (vivarium.cluster_tools.psimulate.environment.EnvVariable method)

V

validate() (in module vivarium.cluster_tools.psimulate.pip_env) validate_artifact_path() (in module vivarium.cluster_tools.psimulate.branches) validate_bash_step() (in module vivarium.cluster_tools.dagger.config.validation) validate_notebook_step() (in module vivarium.cluster_tools.dagger.config.validation) validate_pytest_step() (in module vivarium.cluster_tools.dagger.config.validation) validate_python_step() (in module vivarium.cluster_tools.dagger.config.validation) validate_simulation_step() (in module vivarium.cluster_tools.dagger.config.validation) validate_slack_options() (in module vivarium.cluster_tools.core.cli_tools) value (vivarium.cluster_tools.psimulate.environment.EnvVariable property) vipin command line option --csv --hdf --result-directory -o -v LOGS_DIRECTORY vivarium.cluster_tools module vivarium.cluster_tools.core module vivarium.cluster_tools.core.cli_tools module vivarium.cluster_tools.core.cluster module vivarium.cluster_tools.core.cluster.cli_options module vivarium.cluster_tools.core.cluster.interface module vivarium.cluster_tools.core.logs module vivarium.cluster_tools.dagger module vivarium.cluster_tools.dagger.cli module vivarium.cluster_tools.dagger.config module vivarium.cluster_tools.dagger.config.builder module vivarium.cluster_tools.dagger.config.config module vivarium.cluster_tools.dagger.config.interface module vivarium.cluster_tools.dagger.config.parsing module vivarium.cluster_tools.dagger.config.serialization module vivarium.cluster_tools.dagger.config.validation module

vivarium.cluster_tools.dagger.runner module vivarium.cluster_tools.psimulate module vivarium.cluster_tools.psimulate.branches module vivarium.cluster_tools.psimulate.cli module vivarium.cluster_tools.psimulate.environment module vivarium.cluster_tools.psimulate.jobs module vivarium.cluster_tools.psimulate.model_specification module vivarium.cluster_tools.psimulate.paths module vivarium.cluster_tools.psimulate.performance_logger module vivarium.cluster_tools.psimulate.pip_env module vivarium.cluster_tools.psimulate.results module vivarium.cluster_tools.psimulate.results.cli_options module vivarium.cluster_tools.psimulate.results.writing module vivarium.cluster_tools.psimulate.runner module vivarium.cluster_tools.psimulate.worker module vivarium.cluster_tools.psimulate.worker.load_test_work_horse module vivarium.cluster_tools.psimulate.worker.task_runner module vivarium.cluster_tools.psimulate.worker.vivarium_work_horse module vivarium.cluster_tools.utilities module vivarium.cluster_tools.vipin module vivarium.cluster_tools.vipin.cli module vivarium.cluster_tools.vipin.perf_counters module vivarium.cluster_tools.vipin.perf_report module

W

with_queue_and_max_runtime() (in module vivarium.cluster_tools.core.cluster.cli_options) with_run_config() (in module vivarium.cluster_tools.core.cli_tools) with_sim_verbosity() (in module vivarium.cluster_tools.core.cli_tools) with_slack_channel() (in module vivarium.cluster_tools.core.cli_tools) with_slack_mute() (in module vivarium.cluster_tools.core.cli_tools) with_slack_tag() (in module vivarium.cluster_tools.core.cli_tools) with_verbose_and_pdb() (in module vivarium.cluster_tools.core.cli_tools) with_workflow_config() (in module vivarium.cluster_tools.core.cli_tools) work_horse() (in module vivarium.cluster_tools.psimulate.worker.load_test_work_horse) (in module vivarium.cluster_tools.psimulate.worker.vivarium_work_horse)

worker_logging_root (vivarium.cluster_tools.psimulate.jobs.JobParameters attribute) (vivarium.cluster_tools.psimulate.paths.OutputPaths attribute) workflow_config_to_dict() (in module vivarium.cluster_tools.dagger.config.serialization) WorkflowConfig (class in vivarium.cluster_tools.dagger.config.config) write_backup_metadata() (in module vivarium.cluster_tools.psimulate.runner) write_configuration() (in module vivarium.cluster_tools.psimulate.runner) write_metadata() (in module vivarium.cluster_tools.psimulate.results.writing) write_task_results() (in module vivarium.cluster_tools.psimulate.results.writing)