vivarium_cluster_tools
  • Installation
  • Running simulations in parallel
  • YAML Basics
  • The Branches File
  • Logging
  • API Reference
    • vivarium_cluster_tools
    • Shared CLI tools
    • with_verbose_and_pdb()
    • with_sim_verbosity()
    • coerce_to_full_path()
    • pass_shared_options()
    • MinutesOrNone
    • load_run_config()
    • with_run_config()
    • resolve_deprecated_positional()
    • Logging Utilities
    • add_logging_sink()
    • configure_main_process_logging_to_terminal()
    • configure_main_process_logging_to_file()
    • vivarium_cluster_tools Utilities
    • get_cluster_name()
    • mkdir()
    • backoff_and_retry()
    • psimulate
    • Branch and Keyspace Management
    • Keyspace
    • calculate_input_draws()
    • calculate_random_seeds()
    • calculate_keyspace()
    • load_branch_configuration()
    • expand_branch_templates()
    • validate_artifact_path()
    • psimulate CLI
    • Environment Variables
    • EnvVariable
    • psimulate Jobs
    • generate_task_id()
    • JobParameters
    • build_job_list()
    • already_complete()
    • Model specification management
    • parse()
    • persist()
    • File Path Management
    • InputPaths
    • OutputPaths
    • transform_perf_df_for_appending()
    • append_child_job_data()
    • generate_runner_job_data()
    • append_perf_data_to_central_logs()
    • Reproducible Programming Environments
    • validate()
    • psimulate Runner
    • report_initial_status()
    • try_run_vipin()
    • write_backup_metadata()
    • write_configuration()
    • main()
    • Cluster Interaction
    • Cluster CLI options
    • with_queue_and_max_runtime()
    • Cluster Interface
    • validate_cluster_environment()
    • NativeSpecification
    • get_workflow_timeout_seconds()
    • Results Management
    • Results CLI Options
    • Results Writing
    • write_metadata()
    • write_task_results()
    • get_completed_task_ids()
    • collect_metadata()
    • psimulate Workers
    • Load Test Worker
    • get_psimulate_test_dict()
    • sleep_test()
    • large_results_test()
    • work_horse()
    • Jobmon Task Runner
    • parse_args()
    • main()
    • Vivarium Worker
    • ParallelSimulationContext
    • work_horse()
    • get_backup()
    • get_sim_from_backup()
    • initialize_new_sim()
    • run_simulation()
    • get_sim_results()
    • do_sim_epilogue()
    • remove_backups()
    • vipin - Vivarium Performance Log Parser
  • Glossary
vivarium_cluster_tools
  • API Reference
  • psimulate
  • Cluster Interaction
  • View page source

Cluster Interaction

Tools for interacting with the IHME cluster.

  • Cluster CLI options
  • with_queue_and_max_runtime()
  • Cluster Interface
  • validate_cluster_environment()
  • NativeSpecification
    • NativeSpecification.job_name
    • NativeSpecification.project
    • NativeSpecification.queue
    • NativeSpecification.peak_memory
    • NativeSpecification.max_runtime
    • NativeSpecification.hardware
    • NativeSpecification.NUM_THREADS
    • NativeSpecification.to_jobmon_spec()
  • get_workflow_timeout_seconds()
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