psimulate

Parallel runner for vivarium jobs.

• Branch and Keyspace Management
• Keyspace
  • Keyspace.from_branch_configuration()
  • Keyspace.from_previous_run()
  • Keyspace.from_entry_point_args()
  • Keyspace.persist()
  • Keyspace.add_draws()
  • Keyspace.add_seeds()
• calculate_input_draws()
• calculate_random_seeds()
• calculate_keyspace()
• load_branch_configuration()
• expand_branch_templates()
• validate_artifact_path()
• psimulate CLI
  • psimulate
• Environment Variables
• EnvVariable
  • EnvVariable.name
  • EnvVariable.value
  • EnvVariable.update()
• psimulate Jobs
• JobParameters
  • JobParameters.model_specification
  • JobParameters.branch_configuration
  • JobParameters.input_draw
  • JobParameters.random_seed
  • JobParameters.results_path
  • JobParameters.extras
  • JobParameters.shared
  • JobParameters.job_specific
  • JobParameters.to_dict()
• build_job_list()
• already_complete()
• Model specification management
• parse()
• persist()
• File Path Management
• InputPaths
  • InputPaths.model_specification
  • InputPaths.branch_configuration
  • InputPaths.artifact
  • InputPaths.result_directory
  • InputPaths.from_entry_point_args()
• OutputPaths
  • OutputPaths.root
  • OutputPaths.logging_root
  • OutputPaths.cluster_logging_root
  • OutputPaths.worker_logging_root
  • OutputPaths.worker_settings
  • OutputPaths.environment_file
  • OutputPaths.model_specification
  • OutputPaths.keyspace
  • OutputPaths.branches
  • OutputPaths.results
  • OutputPaths.artifact_name
  • OutputPaths.run_date
  • OutputPaths.run_type
  • OutputPaths.original_run_date
  • OutputPaths.project_name
  • OutputPaths.root_path
  • OutputPaths.logging_to_central_results_directory
  • OutputPaths.from_entry_point_args()
  • OutputPaths.touch()
• Reproducible Programming Environments
• validate()
• psimulate Runner
• process_job_results()
• load_existing_outputs()
• report_initial_status()
• try_run_vipin()
• main()
• Cluster Interaction
• Cluster CLI options
• with_queue_and_max_runtime()
• Cluster Interface
• validate_cluster_environment()
• NativeSpecification
  • NativeSpecification.job_name
  • NativeSpecification.project
  • NativeSpecification.queue
  • NativeSpecification.peak_memory
  • NativeSpecification.max_runtime
  • NativeSpecification.hardware
  • NativeSpecification.NUM_THREADS
  • NativeSpecification.to_cli_args()
• submit_worker_jobs()
• redis_dbs
• Redis DB CLI options
• Redis Database Initialization
• launch_redis_processes()
• Redis Queue and Registry Management
• QueueManager
  • QueueManager.retries_before_fail
  • QueueManager.backoff
  • QueueManager.name
  • QueueManager.failed
  • QueueManager.completed
  • QueueManager.jobs_to_finish
  • QueueManager.enqueue()
  • QueueManager.get_results()
  • QueueManager.update_and_report()
• RegistryManager
  • RegistryManager.jobs_to_finish
  • RegistryManager.enqueue()
  • RegistryManager.allocate_jobs()
  • RegistryManager.get_results()
  • RegistryManager.update_and_report()
• Results Management
• Results Processing CLI Options
• Results Processing
• write_results_batch()
• psimulate RQ Workers
• Distributed Worker
• build_launch_script()
• Vivarium Worker
• work_horse()
• setup_sim()
• do_sim_epilogue()
• parameter_update_format()