psimulate Runner

The main process loop for psimulate runs.

vivarium_cluster_tools.psimulate.runner.process_job_results(registry_manager, existing_outputs, output_directory, no_batch)

Parameters:

• registry_manager (RegistryManager) –

• existing_outputs (DataFrame) –

• output_directory (Path) –

• no_batch (bool) –

Return type:

defaultdict

vivarium_cluster_tools.psimulate.runner.load_existing_outputs(result_path, restart)

Parameters:

• result_path (Path) –

• restart (bool) –

Return type:

DataFrame

vivarium_cluster_tools.psimulate.runner.report_initial_status(num_jobs_completed, existing_outputs, keyspace)

Parameters:

• num_jobs_completed (int) –

• existing_outputs (DataFrame) –

• keyspace (Keyspace) –

Return type:

None

vivarium_cluster_tools.psimulate.runner.try_run_vipin(output_paths)

Parameters:

output_paths (OutputPaths) –

Return type:

None

vivarium_cluster_tools.psimulate.runner.main(command, input_paths, native_specification, max_workers, redis_processes, no_batch, extra_args)

Parameters:

• command (str) –

• input_paths (InputPaths) –

• native_specification (NativeSpecification) –

• max_workers (int | None) –

• redis_processes (int) –

• no_batch (bool) –

• extra_args (dict) –

Return type:

None